Here's a quick list of onesI think may still need an answer:
Not allowing an Attribute to be raised after character creation
Bootstrapping a Minion - This one is now just down now to seeing if we can define specifically what the minion is. In that case a specific Creature, but I wouldn't mind known if I could also send specs for an NPC minion as well.
CapCrusader: This one is one you might have to answer - This one's about greying out a box on the config window. Maybe just something in the settings .1st file will handle it, but not too sure there. CapedCrusader does mention getting back to JBear on that one, when he gets a chance, though.
Bootstrapping a "Source"
And I seem to remember something about an issue with how to let a Trait go above d12+2 or something, but I can't find the thread at the moment. I'll look again when I get a chance.