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Shark - You have it's BAB at +2, it should be +3
Shark - Why would you stat the fly skill for shark?!?!?
Shark - You gave the Shark low light vision,which it does not have
It looks like the size modifier is applied to the BAB shown.
I suspect any skill which has modifiers applied to it (in this case, a penalty to Fly for large size) is automatically stated out.
Animal's by default have low-light vision, and sharks are one of the few that explicitly do not have it, so I could see how it got missed.
If the size modifier is being applied to the BAB, that is an error and needs to be fixed. I believe though size over all effects the Attack bonus, it does not directly change the Base Attack Bonus, I think only HD does that.
On the fly thing.. though annoying and I would like them to work on that that I can ignore it.
That field your looking at isn't the BAB. It's the Base Attack. He has mentioned it previously that that field is the Base Attack Bonus plus (or minus) size modifiers.