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Modifiers>Adjustments>Permanent Adjustments>Skill Points lets you add an extra skill point, just put the point into Engineering.
Theme Knowledge doesn't actually change any of your stats, just lowers the DC for certain knowledge checks. But if you want it noted on the sheet somewhere so you don't forget about it, you could make a custom feat for it (from the Feats menu) and type the description into the "Notes" text box.
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