Alignment Ampoule generates two warnings when assigned to a PFS character: one for being Uncommon and one for being PFS Limited. The GM Approval list suppresses Rarity-based warnings, but not the PFS specific Limited warnings. You can still suppress the various Limited warnings individually or just ignore them.
I don't know what the developers' intent is for the "PFS Approval" list, but you should probably report "Approval doesn't suppress PFS Limited warnings" as a bug and see what they think.
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