The only thing I could think of was the logic baked into things like the Cleric memorization limits (allow level + Wis mod)- code we can't see directly.
I think you'll have to ping Shadow.
For some reason I thought there was an example where script #1 ran post-attribute and put the attribute modifier into a field like abValue2.
Then script #2 ran post-level, but before the official one and grabbed the modifier from abValue2.
But I may be mis-remembering something else, I have not had time to play with it.
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