I am having the same issues.
Per the advice in the "Profile" message I created an overall character named after my chronicle. After that I imported all the PC's into the profile so that I can use the tactical console. After it imported a lot of the stats got resorted and changed. One character had 5 dots in Physical stats however after he was imported in his physical stats changed from Primary dots to Secondary. I imported a total of 4 characters and every single character had validation errors.
Hope that makes sense.