A while ago I used Realm Works for an Edge game. I doubt my organization was particularly good. Anything specific you're interested in?
The best thing I did was create an article (might be the wrong term) with all the funky dice symbols so that I could copy and paste them into other entries as needed.
Also, instead of bothering to input the stats of most NPCs or monsters, I would just take the output from OggDude's tools (you're probably familiar with those) and add that image of the stat block to the character's profile.
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