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If you're talking about the Source folder, that's a reference, not the code HL uses. Only files in the /data directory, not its subfolders, are incorporated into HL.
Changes to the files are made by creating replacements and new things in the editor. The "New (Copy)" button on the bottom left, combined with the "Replaces Thing Id" field on the center-right are what you want to use in order to edit an existing thing.
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