Maidhc,
That was how I understood it to work as well, but it wasn't scaling the damage on the bite attacks after I selected claws with weapon focus. It would scale the bite only when I selected it with Weapon Focus. I hadn't tested it with manufactured weapons rather than natural ones, or gods that only hav one favored weapon. I also want to test the Cult Leader archetype because they trade away weapon focus at level one. I just hadn't had a chance yet.
It does sound like there isn't an individual adjustment or toggle I am missing though, which is good. So Favored Weapon should work even without Weapon Focus.
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