Resolved...
Not sure how or why... I removed all of my user files and had only three errors. Two of which were entirely expected (my working copies of files I added this last update duplicating classes) and a single conflict that only appeared as I was re-adding my files one by one.
None of them appeared to be an issue with the Custom -Universal Specials.user file. I don't get it, but I'm not going to complain.
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