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Murrdox.. the Container relationship has no bearing on the Group.
The Group display is an option that can be set in the Realm preferences (Manage Realm). The option combines similar Categories, as you have noted. Each category is assigned to a Group as part of its Definition.
The Containment relationship between Topics has little or no impact unless you change the Navigation Pane display to "Show Containing Topic Hierarchy" ... at that point, the Groups become irrelevant and the "Tree" of Topics is displayed (though the root will appear in the Group entry it belongs to, all other Topics will be nested in an expandable/collapsible tree under that Topic).
If you turn off the Groups display, each Category gets its own expandable/collapsible section where all Topics of that type appear (unless the "Show Containing Topic Hierarchy" is "on").
Does that help?
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